The explosion happened in an industrial area in Mahe, the largest island in the Indian Ocean archipelago, causing huge damage at the site and to surrounding areas, the presidency said in a statement.
The archipelago is famous for its idyllic white beaches and high-end tourism although around 40 percent of the country's 98,000 inhabitants live in poverty.
"Following an explosion at the CCCL explosives store that has caused massive damage... and major destruction caused by flooding due to heavy rains, the president has declared a State of Emergency for today the 7th December," the presidency said.
"All schools will be closed. Only workers in the essential services and persons travelling will be allowed free movement. This is to allow the emergency services to carry out essential work," the statement added.
The international airport is still operational and ferry services between islands are running for visitors, the tourism-dependent country said on its official Visit Seychelles account on X, formerly Twitter.
The Seychelles Broadcasting Corporation (SBC) reported that heavy rains on Wednesday night caused serious damage in several areas of Mahe.
Photos on SBC's official Facebook account showed collapsed houses, fallen trees, landslides and severe cracks along the surface of roads in Mahe.
A former British colony, the Seychelles is made up of 115 islands and according to 2021 World Bank data is the richest African country as measured by per capita gross domestic product, with tourism and fishing the biggest contributors to the economy.
However, the high cost of living means many still live in poverty.
- El Nino -
Mahe, where the capital Victoria is located, is home to 87 percent of the country's population.
Parts of Africa -- particularly Kenya, Somalia and Ethiopia -- have experienced heavier rainfall than usual since October, linked to the El Nino weather phenomenon.
According to the UN, the situation has been exacerbated by the combined impact of El Nino and the Indian Ocean Dipole -- a climate system defined by the difference in sea surface temperature between western and eastern areas of the ocean.
El Nino is typically associated with increased heat worldwide, as well as drought in some parts of the world and heavy rains elsewhere.
El Nino last occurred in 2018-2019 and was followed by an exceptionally long La Nina -- El Nino's cooling opposite -- which ended earlier this year.
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